PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G093200.1
Common NamePHAVU_006G093200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 291aa    MW: 32227.3 Da    PI: 6.5052
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G093200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.11.8e-551092121101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  Phvul.006G093200.1 109 QLQQFWSSQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 199
                         89*****998899****************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  Phvul.006G093200.1 200 FDFLVDIVPREDL 212
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.87E-33102203IPR009072Histone-fold
PfamPF008082.0E-21131194IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.3E-37132209IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
HSFCFRTSLS EVLDYQCLGS ATSSLGEGNK MDHQGHGQNP SMGVVGSGAQ LTYGSNPYQQ  60
GQLTGPPGSV VTSVGTIQSS GQPAGAQLGQ HQLAYQHIHQ QQQHQLQQQL QQFWSSQYQE  120
IEKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN  180
KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTMPVGGP PDALPYCYMQ  240
PQHAPQVGTA GVIMGKPVMD PNMYAQQSHP YMAPQMWPQP PDQRQPSPEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C1e-41119209294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B1e-41119209294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181187RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9136900.0GQ913690.1 Phaseolus vulgaris nuclear factor Y subunit C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147065.10.0hypothetical protein PHAVU_006G093200g, partial
SwissprotQ8L4B27e-85NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLV7BM390.0V7BM39_PHAVU; Uncharacterized protein (Fragment)
STRINGGLYMA19G42460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-82nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Zanetti ME,Blanco FA,Beker MP,Battaglia M,Aguilar OM
    A C subunit of the plant nuclear factor NF-Y required for rhizobial infection and nodule development affects partner selection in the common bean-Rhizobium etli symbiosis.
    Plant Cell, 2010. 22(12): p. 4142-57
    [PMID:21139064]